Narendran S, Pushpkant Sahu, Swathi Sudhakar, Hema Chandra Kotamarthi. “Electrostatic interactions drive phase separation in Pup protein”, Chem Commun, 2024. https://doi.org/10.1039/D4CC04264F

KK Athira, Jijith Mepperi, Hema Chandra Kotamarthi, Ramesh L Gardas. “Ionic Liquid–based Aqueous Biphasic System as an Alternative Tool for Enhanced Bacterial DNA Extraction”, Analytica Chimica Acta, 2024. https://doi.org/10.1016/j.aca.2024.343045

Meghann Rebecca Kasal; Hema Chandra Kotamarthi; Madeline M. Johnson; Hannah M. Stephens; Matthew J. Lang; Robert T. Sauer; Tania A. Baker. “Lon degrades stable substrates slowly but with enhanced processivity, redefining the attributes of a successful AAA+ protease”, Cell Reports, 2023. https://doi.org/10.1016/j.celrep.2023.113061

Gokul Nalupurackal, Gunaseelan Murugan, Muruga Lokesh, Rahul Vaippully, Amit Chauhan, Birabar Ranjit Kumar Nanda, Chandran Sudakar, Hema Chandra Kotamarthi, Priyankan Datta, Pallab Sinha Mahapatra, Anita Jannasch, Erik Schäffer, Senthilselvan Jayaraman, Basudev Roy

“Simultaneous Optical Trapping and Electromagnetic Micromanipulation of Ferromagnetically Doped NaYF4 Microparticles”, ACS Applied Optical Materials, 2023. https://doi.org/10.1021/acsaom.2c00161

Soham Mukherjee,  Jijith Mepperi,  Pushpkant Sahu,  Deep Kumar Barman,  Hema Chandra Kotamarthi

“Single-Molecule Optical Tweezers As a Tool for Delineating the Mechanisms of Protein-Processing Mechanoenzymes”, ACS Omega, 2022. https://doi.org/10.1021/acsomega.2c06044

Amaris Torres-Delgado, Hema Chandra Kotamarthi, Robert Sauer, Tania Baker. “The intrinsically disordered N-terminal extension of the ClpS adaptor reprograms its partner AAA+ ClpAP protease”, Journal of Molecular Biology, 2020. https://doi.org/10.1016/j.jmb.2020.07.007

Hema Chandra Kotamarthi, Robert Sauer, Tania Baker. “The non-dominant AAA+ ring in the ClpAP protease functions as an anti-stalling motor to accelerate protein unfolding and translocation”, Cell Reports, 2020. https://doi.org/10.1016/j.celrep.2020.01.110

Adrian Olivares*, Hema Chandra Kotamarthi*, Benjamin Stein, Robert Sauer, Tania Baker, “ Effect of directional pulling on mechanical protein degradation by ATP-dependent proteolytic machines”, Proceedings of National Academy of Sciences, USA, 2017. * Equal Contribution. https://doi.org/10.1073/pnas.1707794114

Hema Chandra Kotamarthi, Sri Rama Koti Ainavarapu, “Mechanical Unfolding Studies on Single-Domain SUMO protein and Multi-Domain Periplasmic Binding Proteins”, Biophysical Reviews and Letters, 2017. https://doi.org/10.1142/S1793048016300024

Hema Chandra Kotamarthi, Anju Yadav, and Sri Rama Koti Ainavarapu. “Small peptide binding stiffens the ubiquitin-like protein SUMO1”,

Biophysical Journal, 2015. https://doi.org/10.1016/j.bpj.2014.11.3474

Manindra Bera, Hema Chandra Kotamarthi, Subarna Dutta, Angana Ray, Saptaparni Ghosh, Dhananjay Bhattacharyya, Sri Rama Koti Ainavarapu, Kaushik Sengupta. “Characterization of unfolding mechanism of human lamin A Ig fold by single molecule force spectroscopy – implications in EDMD”, Biochemistry, 2014. https://doi.org/10.1021/bi500726f

Hema Chandra Kotamarthi, Satya Narayan, Sri Rama Koti Ainavarapu. “Mechanical unfolding of ribose binding protein (RBP) and its comparison with other periplasmic binding proteins (PBPs)”, Journal of Physical Chemistry B, 2014. https://doi.org/10.1021/jp507463q

Vijay Kumar Ravi, Mohit Goel, Hema Chandra Kotamarthi , Sri Rama Koti Ainavarapu, Rajaram Swaminathan. “Preventing Disulphide Bond Formation Weakens Non-covalent Forces Among Lysozyme Aggregates”, PLOS ONE , 2014. https://doi.org/10.1371/journal.pone.0087012

Venkatraman Ramanujam, Hema Chandra Kotamarthi, Sri Rama Koti Ainavarapu. “Ca2+ binding enhanced mechanical stability of an archaeal crystallin”, PLOS ONE , 2014. https://doi.org/10.1371/journal.pone.0094513

Hema Chandra Kotamarthi, Riddhi Sharma, Satya Narayan, Sayoni Ray, and Sri Rama Koti  Ainavarapu. “Multiple unfolding pathways of leucine binding protein (LBP) probed by single-molecule force spectroscopy (SMFS)”, Journal of the American Chemical Society, 2013. https://doi.org/10.1021/ja406238q

This publication has been highlighted in

• JACS Editorial and JACS Select issue on “ Protein Dynamics in Simulation and Experiment".

• Spotlights on Recent JACS Publications, J. Am. Chem. Soc., 2013, Vol. 135, p15269, under the title “PULLING ON A PROTEIN TO MAP ITS UNFOLDING PATHWAYS”.

Hema Chandra Kotamarthi, Riddhi Sharma, Sri Rama Koti Ainavarapu. “Single- Molecule Studies on PolySUMO Proteins Reveal Their Mechanical Flexibility”,

Biophysical Journal, 2013. https://doi.org/10.1016/j.bpj.2013.04.008

Shama Perween, Balasaheb Chandanshive, Hema Chandra Kotamarthi, Deepa Khushalani. “Single Amino Self-Assembled Structure”, Soft Matter, 2013. https://doi.org/10.1039/C3SM51054A

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